plotPredIntNormDesign.Rd
Create plots involving sample size, number of future observations, half-width, estimated standard deviation, and confidence level for a prediction interval for the next \(k\) observations from a normal distribution.
plotPredIntNormDesign(x.var = "n", y.var = "half.width", range.x.var = NULL,
n = 25, k = 1, n.mean = 1, half.width = 4 * sigma.hat, sigma.hat = 1,
method = "Bonferroni", conf.level = 0.95, round.up = FALSE, n.max = 5000,
tol = 1e-07, maxiter = 1000, plot.it = TRUE, add = FALSE, n.points = 100,
plot.col = "black", plot.lwd = 3 * par("cex"), plot.lty = 1,
digits = .Options$digits, cex.main = par("cex"), ..., main = NULL,
xlab = NULL, ylab = NULL, type = "l")
character string indicating what variable to use for the x-axis.
Possible values are "n"
(sample size; the default),
"half.width"
(the half-width of the confidence interval),
"k"
(number of future observations or averages),
"sigma.hat"
(the estimated standard deviation), and
"conf.level"
(the confidence level).
character string indicating what variable to use for the y-axis.
Possible values are "half.width"
(the half-width of the confidence interval;
the default), and "n"
(sample size).
numeric vector of length 2 indicating the range of the x-variable to use for the plot.
The default value depends on the value of x.var
.
When x.var="n"
the default value is c(2,50)
.
When x.var="half.width"
the default value is c(2.5 * sigma.hat, 4 * sigma.hat)
.
When x.var="k"
the default value is c(1, 20)
.
When x.var="sigma.hat"
, the default value is c(0.1, 2)
.
When x.var="conf.level"
, the default value is c(0.5, 0.99)
.
positive integer greater than 1 indicating the sample size upon
which the prediction interval is based. The default value is n=25
.
Missing (NA
), undefined (NaN
), and infinite (Inf
, -Inf
)
values are not allowed.
positive integer specifying the number of future observations
or averages the prediction interval should contain with confidence level
conf.level
. The default value is k=1
. This argument is
ignored if x.var="k"
.
positive integer specifying the sample size associated with the \(k\) future
averages. The default value is n.mean=1
(i.e., individual observations).
Note that all future averages must be based on the same sample size.
positive scalar indicating the half-widths of the prediction interval.
The default value is half.width=4*sigma.hat
. This argument is ignored
if either x.var="half.width"
or y.var="half.width"
.
numeric scalar specifying the value of the estimated standard deviation.
The default value is sigma.hat=1
. This argument is ignored if
x.var="sigma.hat"
.
character string specifying the method to use if the number of future observations
(k
) is greater than 1. The possible values are method="Bonferroni"
(approximate method based on Bonferonni inequality; the default), and method="exact"
(exact method due to Dunnett, 1955).
This argument is ignored if k=1
.
numeric scalar between 0 and 1 indicating the confidence level of the
prediction interval. The default value is conf.level=0.95
.
for the case when y.var="n"
, logical scalar indicating whether to round
up the values of the computed sample
sizes to the next smallest integer. The default value is round.up=TRUE
.
for the case when y.var="n"
, the maximum possible sample size. The default
value is n.max=5000
.
numeric scalar indicating the tolerance to use in the uniroot
search algorithm. The default value is tol=1e-7
.
positive integer indicating the maximum number of iterations to use in the
uniroot
search algorithm. The default value is
maxiter=1000
.
a logical scalar indicating whether to create a plot or add to the existing plot
(see explanation of the argument add
below) on the current graphics device.
If plot.it=FALSE
, no plot is produced, but a list of (x,y) values is returned
(see the section VALUE). The default value is plot.it=TRUE
.
a logical scalar indicating whether to add the design plot to the existing plot (add=TRUE
),
or to create a plot from scratch (add=FALSE
). The default value is add=FALSE
.
This argument is ignored if plot.it=FALSE
.
a numeric scalar specifying how many (x,y) pairs to use to produce the plot.
There are n.points
x-values evenly spaced between range.x.var[1]
and range.x.var[2]
. The default value is n.points=100
.
a numeric scalar or character string determining the color of the plotted line or points. The default value
is plot.col="black"
. See the entry for col
in the help file for par
for more information.
a numeric scalar determining the width of the plotted line. The default value is
3*par("cex")
. See the entry for lwd
in the help file for par
for more information.
a numeric scalar determining the line type of the plotted line. The default value is
plot.lty=1
. See the entry for lty
in the help file for par
for more information.
a scalar indicating how many significant digits to print out on the plot. The default
value is the current setting of options("digits")
.
additional graphical parameters (see par
).
See the help files for predIntNorm
, predIntNormK
,
predIntNormHalfWidth
, and predIntNormN
for
information on how to compute a prediction interval for the next \(k\)
observations or averages from a normal distribution, how the half-width is
computed when other quantities are fixed, and how the
sample size is computed when other quantities are fixed.
plotPredIntNormDesign
invisibly returns a list with components:
x-coordinates of points that have been or would have been plotted.
y-coordinates of points that have been or would have been plotted.
See the help file for predIntNorm
.
See the help file for predIntNorm
.
In the course of designing a sampling program, an environmental scientist may wish
to determine the relationship between sample size, confidence level, and half-width
if one of the objectives of the sampling program is to produce prediction intervals.
The functions predIntNormHalfWidth
, predIntNormN
, and
plotPredIntNormDesign
can be used to investigate these relationships for the
case of normally-distributed observations.
# Look at the relationship between half-width and sample size for a
# prediction interval for k=1 future observation, assuming an estimated
# standard deviation of 1 and a confidence level of 95%:
dev.new()
plotPredIntNormDesign()
#==========
# Plot sample size vs. the estimated standard deviation for various levels
# of confidence, using a half-width of 4:
dev.new()
plotPredIntNormDesign(x.var = "sigma.hat", y.var = "n", range.x.var = c(1, 2),
ylim = c(0, 90), main = "")
plotPredIntNormDesign(x.var = "sigma.hat", y.var = "n", range.x.var = c(1, 2),
conf.level = 0.9, add = TRUE, plot.col = "red")
plotPredIntNormDesign(x.var = "sigma.hat", y.var = "n", range.x.var = c(1, 2),
conf.level = 0.8, add = TRUE, plot.col = "blue")
legend("topleft", c("95%", "90%", "80%"), lty = 1, lwd = 3 * par("cex"),
col = c("black", "red", "blue"), bty = "n")
title(main = paste("Sample Size vs. Sigma Hat for Prediction Interval for",
"k=1 Future Obs, Half-Width=4, and Various Confidence Levels",
sep = "\n"))
#==========
# The data frame EPA.92c.arsenic3.df contains arsenic concentrations (ppb)
# collected quarterly for 3 years at a background well and quarterly for
# 2 years at a compliance well. Using the data from the background well,
# plot the relationship between half-width and sample size for a two-sided
# 90% prediction interval for k=4 future observations.
EPA.92c.arsenic3.df
#> Arsenic Year Well.type
#> 1 12.6 1 Background
#> 2 30.8 1 Background
#> 3 52.0 1 Background
#> 4 28.1 1 Background
#> 5 33.3 2 Background
#> 6 44.0 2 Background
#> 7 3.0 2 Background
#> 8 12.8 2 Background
#> 9 58.1 3 Background
#> 10 12.6 3 Background
#> 11 17.6 3 Background
#> 12 25.3 3 Background
#> 13 48.0 4 Compliance
#> 14 30.3 4 Compliance
#> 15 42.5 4 Compliance
#> 16 15.0 4 Compliance
#> 17 47.6 5 Compliance
#> 18 3.8 5 Compliance
#> 19 2.6 5 Compliance
#> 20 51.9 5 Compliance
# Arsenic Year Well.type
#1 12.6 1 Background
#2 30.8 1 Background
#3 52.0 1 Background
#...
#18 3.8 5 Compliance
#19 2.6 5 Compliance
#20 51.9 5 Compliance
mu.hat <- with(EPA.92c.arsenic3.df,
mean(Arsenic[Well.type=="Background"]))
mu.hat
#> [1] 27.51667
#[1] 27.51667
sigma.hat <- with(EPA.92c.arsenic3.df,
sd(Arsenic[Well.type=="Background"]))
sigma.hat
#> [1] 17.10119
#[1] 17.10119
dev.new()
plotPredIntNormDesign(x.var = "n", y.var = "half.width", range.x.var = c(4, 50),
k = 4, sigma.hat = sigma.hat, conf.level = 0.9)
#==========
# Clean up
#---------
rm(mu.hat, sigma.hat)
graphics.off()